Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 238 curated entries in PaperBLAST's database that match '3.2.1.20'.

These curated entries have 170 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS13755 amb2735 WP_011385114.1: alpha-glucosidase/alpha-galactosidase
is similar to:
PaperBLAST

PALH_ERWRD / Q9AI65: Alpha-glucosidase; EC 3.2.1.20 from Erwinia rhapontici
Q9AI65: alpha-glucosidase (EC 3.2.1.20); 6-phospho-beta-glucosidase (EC 3.2.1.86) from Erwinia rhapontici

40% id,
52% cov

AAK28734.1: α-glucosidase (PalH) (EC 3.2.1.20)

40% id,
50% cov

PALH_ERWRD / Q9AI65: Alpha-glucosidase; EC 3.2.1.20 from Erwinia rhapontici
Q9AI65: alpha-glucosidase (EC 3.2.1.20); 6-phospho-beta-glucosidase (EC 3.2.1.86) from Erwinia rhapontici

27% id,
42% cov

More...

AMB_RS01115 amb0219 WP_011382666.1: beta-glucosidase
is similar to:
PaperBLAST

BGLC_OLEEU / Q8GVD0: Oleuropein beta-glucosidase; Beta-glucosidase; OeGLU; EC 3.2.1.206 from Olea europaea
Q8GVD0: oleuropein beta-glucosidase (EC 3.2.1.206) from Olea europaea

40% id,
39% cov

A0A2H4ER88: oleuropein beta-glucosidase (EC 3.2.1.206) from Olea europaea

39% id,
39% cov

BGLC_OLEEU / Q8GVD0: Oleuropein beta-glucosidase; Beta-glucosidase; OeGLU; EC 3.2.1.206 from Olea europaea
Q8GVD0: oleuropein beta-glucosidase (EC 3.2.1.206) from Olea europaea

28% id,
52% cov

More...

AMB_RS11280 amb2230 WP_050750700.1: beta-glucosidase
is similar to:
PaperBLAST

BGLC_OLEEU / Q8GVD0: Oleuropein beta-glucosidase; Beta-glucosidase; OeGLU; EC 3.2.1.206 from Olea europaea
Q8GVD0: oleuropein beta-glucosidase (EC 3.2.1.206) from Olea europaea

40% id,
36% cov

A0A2H4ER88: oleuropein beta-glucosidase (EC 3.2.1.206) from Olea europaea

40% id,
36% cov

BGLC_OLEEU / Q8GVD0: Oleuropein beta-glucosidase; Beta-glucosidase; OeGLU; EC 3.2.1.206 from Olea europaea
Q8GVD0: oleuropein beta-glucosidase (EC 3.2.1.206) from Olea europaea

28% id,
51% cov

More...

AMB_RS01160 amb0228 WP_011382675.1: glycosyltransferase
is similar to:
PaperBLAST

Q2PCE3: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum

24% id,
56% cov

AMB_RS15425 amb3064 WP_011385440.1: glycogen debranching enzyme GlgX
is similar to:
PaperBLAST

AAA57313.1: α-glucosidase (AglA) (EC 3.2.1.20)
AAZ54871.1: α-glucosidase (Tfu_0833) (EC 3.2.1.20)

26% id,
19% cov

AMB_RS15430 amb3065 WP_050750734.1: 1,4-alpha-glucan branching protein GlgB
is similar to:
PaperBLAST

BAE48285.1: α-glucosidase (Gsj) (EC 3.2.1.20)
Q33E90: alpha-glucosidase (EC 3.2.1.20) from Geobacillus sp.

30% id,
16% cov

Shewana3_2311: Alpha-glucosidase (EC 3.2.1.20) from Shewanella sp.

29% id,
16% cov

BAA12704.1: α-glucosidase / exo-α-1,4-glucosidase (EC 3.2.1.20)

29% id,
16% cov

More...

AMB_RS19190 amb3790 WP_043745284.1: S-layer family protein
is similar to:
PaperBLAST

Q7PC53: exo-chitinase (non-reducing end) (EC 3.2.1.200) from Saccharophagus degradans

21% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 7 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

132966-134015 (frame +3) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

Q2PCE3: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum
Also see hits to annotated proteins above

24% id,
85% cov

3637631-3638152 (frame +2) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

Q7PC53: exo-chitinase (non-reducing end) (EC 3.2.1.200) from Saccharophagus degradans
Also see hits to annotated proteins above

39% id,
13% cov

1025784-1026422 (frame -2) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

Q7PC53: exo-chitinase (non-reducing end) (EC 3.2.1.200) from Saccharophagus degradans
Also see hits to annotated proteins above

32% id,
13% cov

Q7PC53: exo-chitinase (non-reducing end) (EC 3.2.1.200) from Saccharophagus degradans
Also see hits to annotated proteins above

39% id,
4% cov

3636410-3636979 (frame +2) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

Q7PC53: exo-chitinase (non-reducing end) (EC 3.2.1.200) from Saccharophagus degradans
Also see hits to annotated proteins above

31% id,
11% cov

1407232-1407708 (frame -1) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

Q7PC53: exo-chitinase (non-reducing end) (EC 3.2.1.200) from Saccharophagus degradans
Also see hits to annotated proteins above

25% id,
9% cov

2449399-2449644 (frame -1) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

Q7PC53: exo-chitinase (non-reducing end) (EC 3.2.1.200) from Saccharophagus degradans
Also see hits to annotated proteins above

40% id,
6% cov

4563728-4563907 (frame -3) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

O43451: alpha-glucosidase (EC 3.2.1.20); glucan 1,4-alpha-glucosidase (EC 3.2.1.3) from Homo sapiens

45% id,
2% cov

AAC39568.2: maltase-glucoamylase (MgaM;Mga;MGAML) (EC 3.2.1.20)

45% id,
2% cov

MGA_HUMAN / O43451: Maltase-glucoamylase; Alpha-1,4-glucosidase; EC 3.2.1.20 from Homo sapiens

45% id,
2% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory