Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 185 curated entries in PaperBLAST's database that match '3.2.1.20' as complete word(s).

These curated entries have 140 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS13755 amb2735 WP_011385114.1: alpha-glucosidase/alpha-galactosidase
is similar to:
PaperBLAST

PALH_ERWRD / Q9AI65: Alpha-glucosidase; EC 3.2.1.20 from Erwinia rhapontici
Q9AI65: alpha-glucosidase (EC 3.2.1.20); 6-phospho-beta-glucosidase (EC 3.2.1.86) from Erwinia rhapontici

40% id,
52% cov

AAK28734.1: α-glucosidase (PalH) (EC 3.2.1.20)

40% id,
50% cov

PALH_ERWRD / Q9AI65: Alpha-glucosidase; EC 3.2.1.20 from Erwinia rhapontici
Q9AI65: alpha-glucosidase (EC 3.2.1.20); 6-phospho-beta-glucosidase (EC 3.2.1.86) from Erwinia rhapontici

27% id,
42% cov

More...

AMB_RS01160 amb0228 WP_043743090.1: glycosyltransferase family 2 protein
is similar to:
PaperBLAST

Q2PCE3: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum

24% id,
56% cov

glgX AMB_RS15425 amb3064 WP_011385440.1: glycogen debranching protein GlgX
is similar to:
PaperBLAST

AAA57313.1: α-glucosidase (AglA) (EC 3.2.1.20)
AAZ54871.1: α-glucosidase (Tfu_0833) (EC 3.2.1.20)

26% id,
19% cov

glgB AMB_RS15430 amb3065 WP_050750734.1: 1,4-alpha-glucan branching protein GlgB
is similar to:
PaperBLAST

BAE48285.1: α-glucosidase (Gsj) (EC 3.2.1.20)
Q33E90: alpha-glucosidase (EC 3.2.1.20) from Geobacillus sp.

30% id,
16% cov

Shewana3_2311: Alpha-glucosidase (EC 3.2.1.20) from Shewanella sp.

29% id,
16% cov

BAA12704.1: α-glucosidase / exo-α-1,4-glucosidase (EC 3.2.1.20)

29% id,
16% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

132966-134015 (frame +3) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence
is similar to:
PaperBLAST

Q2PCE3: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum
Also see hits to annotated proteins above

24% id,
85% cov

4563728-4563907 (frame -3) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence
is similar to:
PaperBLAST

AAC39568.2: maltase-glucoamylase (MgaM;Mga;MGAML) (EC 3.2.1.20)

45% id,
2% cov

MGA_HUMAN / O43451: Maltase-glucoamylase; Alpha-1,4-glucosidase; EC 3.2.1.20 from Homo sapiens

45% id,
2% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory