Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 317 curated entries in PaperBLAST's database that match '3.5.1.1'.

These curated entries have 201 distinct sequences.

Running ublast with E ≤ 0.01

Found 29 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS21795 amb4309 WP_043745597.1: gamma-glutamyltransferase family protein
is similar to:
PaperBLAST

HPXW_KLEP7 / A6T9C8: Oxamate amidohydrolase proenzyme; EC 3.5.1.126 from Klebsiella pneumoniae
A6T9C8: oxamate amidohydrolase (EC 3.5.1.126) from Klebsiella pneumoniae

51% id,
100% cov

AMB_RS19510 amb3855 WP_011386209.1: UDP-3-O-acyl-N-acetylglucosamine deacetylase
is similar to:
PaperBLAST

LPXC_PSEAE / P47205: UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-acyl-GlcNAc deacetylase; UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase; EC 3.5.1.108 from Pseudomonas aeruginosa
P47205: UDP-3-O-acyl-N-acetylglucosamine deacetylase (EC 3.5.1.108) from Pseudomonas aeruginosa

50% id,
99% cov

LPXC_ECOLI / P0A725: UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-acyl-GlcNAc deacetylase; Protein EnvA; UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase; EC 3.5.1.108 from Escherichia coli
EnvA / b0096: UDP-3-O-acyl-N-acetylglucosamine deacetylase (EC 3.5.1.108) from Escherichia coli
lpxC / P0A725: UDP-3-O-acyl-N-acetylglucosamine deacetylase (EC 3.5.1.108) from Escherichia coli

46% id,
100% cov

Q1ME43: UDP-3-O-acyl-N-acetylglucosamine deacetylase (EC 3.5.1.108) from Rhizobium leguminosarum

44% id,
95% cov

More...

AMB_RS19600 amb3874 WP_011386228.1: succinyl-diaminopimelate desuccinylase
is similar to:
PaperBLAST

DAPE_NEIMB / Q9JYL2: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Neisseria meningitidis

45% id,
99% cov

DAPE_VIBCH / Q9KQ52: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Vibrio cholerae
Q9KQ52: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Vibrio cholerae

44% id,
99% cov

DAPE_HAEIN / P44514: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Haemophilus influenzae
dapE / P44514: N-succinyl-L,L-diaminopimelate desuccinylase subunit (EC 3.5.1.18) from Haemophilus influenzae
P44514: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Haemophilus influenzae

42% id,
98% cov

More...

AMB_RS08115 amb1607 WP_011384016.1: carbon-nitrogen hydrolase family protein
is similar to:
PaperBLAST

NIT1_SYNYG / P0DP66: Deaminated glutathione amidase; dGSH amidase; Nitrilase homolog 1; syNit1; EC 3.5.1.128 from Synechocystis sp.
P0DP66: deaminated glutathione amidase (EC 3.5.1.128) from Synechocystis sp.

43% id,
99% cov

Q9HVU6: deaminated glutathione amidase (EC 3.5.1.128) from Pseudomonas aeruginosa

40% id,
95% cov

NILP2_ARATH / Q94JV5: Deaminated glutathione amidase, chloroplastic/cytosolic; dGSH amidase; Nitrilase-like protein 2; Protein nitrilase 1 homolog; AtNit1; Protein Nit1 homolog; EC 3.5.1.128 from Arabidopsis thaliana

42% id,
86% cov

More...

AMB_RS22045 amb4358 WP_011386705.1: acetylglutamate kinase
is similar to:
PaperBLAST

O67848: UDP-3-O-acyl-N-acetylglucosamine deacetylase (EC 3.5.1.108) from Aquifex aeolicus

46% id,
92% cov

AMB_RS18080 amb3572 WP_011385930.1: formyltetrahydrofolate deformylase
is similar to:
PaperBLAST

PURU_ECOLI / P37051: Formyltetrahydrofolate deformylase; Formyl-FH(4) hydrolase; EC 3.5.1.10 from Escherichia coli
YchI / b1232: formyltetrahydrofolate deformylase (EC 3.5.1.10) from Escherichia coli
purU / GB|AP_001858.1: formyltetrahydrofolate deformylase; EC 3.5.1.10 from Escherichia coli
purU / P37051: formyltetrahydrofolate deformylase (EC 3.5.1.10) from Escherichia coli

42% id,
98% cov

PURU1_ARATH / Q93YQ3: Formyltetrahydrofolate deformylase 1, mitochondrial; EC 3.5.1.10 from Arabidopsis thaliana

39% id,
86% cov

PURU2_ARATH / F4JP46: Formyltetrahydrofolate deformylase 2, mitochondrial; EC 3.5.1.10 from Arabidopsis thaliana

38% id,
85% cov

AMB_RS12965 amb2576 WP_011384957.1: penicillin acylase family protein
is similar to:
PaperBLAST

Q72G76: penicillin amidase (EC 3.5.1.11) from Thermus thermophilus

41% id,
95% cov

PAC2_PSES3 / P15558: Penicillin acylase 2 proenzyme; Cephalosporin acylase II; Penicillin acylase II; Penicillin amidase II; EC 3.5.1.11 from Pseudomonas sp.

30% id,
98% cov

Q83YY8: penicillin amidase (EC 3.5.1.11) from Achromobacter xylosoxidans

30% id,
67% cov

More...

AMB_RS11990 amb2375 WP_011384771.1: acetylornithine deacetylase
is similar to:
PaperBLAST

ARGE_ECOLI / P23908: Acetylornithine deacetylase; AO; Acetylornithinase; N-acetylornithinase; NAO; EC 3.5.1.16 from Escherichia coli
ArgE / b3957: acetylornithine deacetylase (EC 3.5.1.16) from Escherichia coli
argE / P23908: acetylornithine deacetylase (EC 3.5.1.16) from Escherichia coli

35% id,
99% cov

argE / Q8P8J5: acetylcitrulline deacetylase subunit (EC 3.5.1.16) from Xanthomonas campestris

27% id,
98% cov

DAPE_VIBCH / Q9KQ52: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Vibrio cholerae
Q9KQ52: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Vibrio cholerae

27% id,
92% cov

More...

gatA AMB_RS07995 amb1585 WP_043743836.1: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A
is similar to:
PaperBLAST

ATZE_PSESD / Q936X3: 1-carboxybiuret hydrolase subunit AtzE; EC 3.5.1.131 from Pseudomonas sp.
atzE / Q936X3: 1-carboxybiuret hydrolase catalytic subunit (EC 3.5.1.3; EC 3.5.1.131) from Pseudomonas sp.

32% id,
98% cov

F6N111: aryl-acylamidase (EC 3.5.1.13) from Paracoccus sp.

28% id,
98% cov

amdA / P27765: nicotinamidase (EC 3.5.1.19) from Pseudomonas chlororaphis

32% id,
82% cov

More...

AMB_RS14525 WP_011385262.1: xylanase/chitin deacetylase
is similar to:
PaperBLAST

PGDA3_BACCR / Q81AF4: Peptidoglycan-N-acetylglucosamine deacetylase BC_3618; Peptidoglycan GlcNAc deacetylase; EC 3.5.1.104 from Bacillus cereus
Q81AF4: peptidoglycan-N-acetylglucosamine deacetylase (EC 3.5.1.104) from Bacillus cereus

34% id,
86% cov

PGDA2_BACCR / Q81EJ6: Peptidoglycan-N-acetylglucosamine deacetylase BC_1974; Peptidoglycan GlcNAc deacetylase; EC 3.5.1.104 from Bacillus cereus

32% id,
90% cov

cda / Q6DWK3: chitin deacetylase (EC 3.5.1.136; EC 3.5.1.41) from Colletotrichum lindemuthianum

32% id,
90% cov

More...

AMB_RS06260 amb1233 WP_011383645.1: NAD+ synthase
is similar to:
PaperBLAST

RSAM_PSESP / Q75SP7: (R)-stereoselective amidase; EC 3.5.1.100 from Pseudomonas sp.
ramA / Q75SP7: (R)-amidase (EC 3.5.1.100) from Pseudomonas sp.
Q75SP7: (R)-amidase (EC 3.5.1.100) from Pseudomonas sp.

33% id,
78% cov

AMB_RS04115 amb0805 WP_011383248.1: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
is similar to:
PaperBLAST

ALDH1L1 / O75891: 10-formyltetrahydrofolate dehydrogenase 1 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

42% id,
53% cov

ALDH1L2 / Q3SY69: 10-formyltetrahydrofolate dehydrogenase 2 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

39% id,
52% cov

AMB_RS08440 amb1668 WP_011384077.1: amidase
is similar to:
PaperBLAST

F6N111: aryl-acylamidase (EC 3.5.1.13) from Paracoccus sp.

27% id,
82% cov

amdA / P27765: nicotinamidase (EC 3.5.1.19) from Pseudomonas chlororaphis

32% id,
53% cov

ATZE_PSESD / Q936X3: 1-carboxybiuret hydrolase subunit AtzE; EC 3.5.1.131 from Pseudomonas sp.
atzE / Q936X3: 1-carboxybiuret hydrolase catalytic subunit (EC 3.5.1.3; EC 3.5.1.131) from Pseudomonas sp.

37% id,
44% cov

More...

AMB_RS14335 amb2847 WP_011385224.1: phosphoribosylglycinamide formyltransferase
is similar to:
PaperBLAST

PURU_ECOLI / P37051: Formyltetrahydrofolate deformylase; Formyl-FH(4) hydrolase; EC 3.5.1.10 from Escherichia coli
YchI / b1232: formyltetrahydrofolate deformylase (EC 3.5.1.10) from Escherichia coli
purU / GB|AP_001858.1: formyltetrahydrofolate deformylase; EC 3.5.1.10 from Escherichia coli
purU / P37051: formyltetrahydrofolate deformylase (EC 3.5.1.10) from Escherichia coli

31% id,
70% cov

PURU1_ARATH / Q93YQ3: Formyltetrahydrofolate deformylase 1, mitochondrial; EC 3.5.1.10 from Arabidopsis thaliana

33% id,
61% cov

PURU2_ARATH / F4JP46: Formyltetrahydrofolate deformylase 2, mitochondrial; EC 3.5.1.10 from Arabidopsis thaliana

33% id,
60% cov

More...

gabD AMB_RS06710 amb1321 WP_011383730.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

ALDH1L1 / O75891: 10-formyltetrahydrofolate dehydrogenase 1 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

40% id,
52% cov

ALDH1L2 / Q3SY69: 10-formyltetrahydrofolate dehydrogenase 2 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

37% id,
52% cov

AMB_RS18195 amb3595 WP_011385953.1: DUF1487 domain-containing protein
is similar to:
PaperBLAST

ALDH1L1 / O75891: 10-formyltetrahydrofolate dehydrogenase 1 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

39% id,
53% cov

ALDH1L2 / Q3SY69: 10-formyltetrahydrofolate dehydrogenase 2 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

38% id,
52% cov

gabD AMB_RS04160 amb0814 WP_011383257.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

ALDH1L1 / O75891: 10-formyltetrahydrofolate dehydrogenase 1 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

36% id,
53% cov

ALDH1L2 / Q3SY69: 10-formyltetrahydrofolate dehydrogenase 2 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

34% id,
52% cov

AMB_RS03760 amb0732 WP_011383175.1: glutamine-hydrolyzing GMP synthase
is similar to:
PaperBLAST

atdA2 / Q44250: N-glutamylanilide hydrolase (EC 3.5.1.123) from Acinetobacter sp.

28% id,
67% cov

AMB_RS13050 amb2593 WP_011384974.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

ALDH1L1 / O75891: 10-formyltetrahydrofolate dehydrogenase 1 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

34% id,
53% cov

ALDH1L2 / Q3SY69: 10-formyltetrahydrofolate dehydrogenase 2 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

33% id,
51% cov

AMB_RS02140 amb0415 WP_011382859.1: PIG-L family deacetylase
is similar to:
PaperBLAST

O58235: chitin disaccharide deacetylase (EC 3.5.1.105); N-acetylglucosamine deacetylase (EC 3.5.1.33) from Pyrococcus horikoshii

30% id,
58% cov

AMB_RS19955 WP_043745359.1: hypothetical protein
is similar to:
PaperBLAST

O53444: peptidoglycan-N-acetylglucosamine deacetylase (EC 3.5.1.104) from Mycobacterium tuberculosis

27% id,
63% cov

AMB_RS00770 amb0151 WP_083763402.1: polysaccharide deacetylase family protein
is similar to:
PaperBLAST

PGDA1_BACCR / Q81EK9: Peptidoglycan-N-acetylglucosamine deacetylase BC_1960; Peptidoglycan GlcNAc deacetylase; EC 3.5.1.104 from Bacillus cereus
BC_1960 / Q81EK9: peptidoglycan-N-acetylglucosamine deacetylase (EC 3.5.1.104) from Bacillus cereus
Q81EK9: peptidoglycan-N-acetylglucosamine deacetylase (EC 3.5.1.104) from Bacillus cereus

24% id,
68% cov

PGDA2_BACCR / Q81EJ6: Peptidoglycan-N-acetylglucosamine deacetylase BC_1974; Peptidoglycan GlcNAc deacetylase; EC 3.5.1.104 from Bacillus cereus

24% id,
67% cov

O53444: peptidoglycan-N-acetylglucosamine deacetylase (EC 3.5.1.104) from Mycobacterium tuberculosis

28% id,
52% cov

More...

AMB_RS12610 amb2507 WP_011384888.1: bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
is similar to:
PaperBLAST

ALDH1L1 / O75891: 10-formyltetrahydrofolate dehydrogenase 1 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

28% id,
50% cov

ALDH1L2 / Q3SY69: 10-formyltetrahydrofolate dehydrogenase 2 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

28% id,
48% cov

AMB_RS12500 amb2487 WP_043744429.1: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
is similar to:
PaperBLAST

lpxC/fabZ / A0A1R4AFM6: bifunctional UDP-3-O-acyl-N-acetylglucosamine deacetylase/3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC 3.5.1.108; EC 4.2.1.59) from Porphyromonas gingivalis

44% id,
31% cov

AMB_RS08595 amb1695 WP_011384103.1: ankyrin repeat-containing protein
is similar to:
PaperBLAST

H0W0T5: asparaginase (EC 3.5.1.1) from Cavia porcellus

26% id,
50% cov

W0G253: asparaginase (EC 3.5.1.1) from Rhizomucor miehei

27% id,
32% cov

ASPG_DIRIM / Q9U518: L-asparaginase; DiAsp; L-asparagine amidohydrolase; EC 3.5.1.1 from Dirofilaria immitis

28% id,
29% cov

More...

AMB_RS07275 amb1441 WP_011383851.1: xylanase/chitin deacetylase
is similar to:
PaperBLAST

O53444: peptidoglycan-N-acetylglucosamine deacetylase (EC 3.5.1.104) from Mycobacterium tuberculosis

28% id,
38% cov

AMB_RS01230 amb0242 WP_011382689.1: methionyl-tRNA formyltransferase
is similar to:
PaperBLAST

ALDH1L2 / Q3SY69: 10-formyltetrahydrofolate dehydrogenase 2 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

29% id,
30% cov

ALDH1L1 / O75891: 10-formyltetrahydrofolate dehydrogenase 1 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

28% id,
30% cov

AMB_RS08275 amb1635 WP_011384044.1: hydrogenase maturation protein
is similar to:
PaperBLAST

ALDH1L2 / Q3SY69: 10-formyltetrahydrofolate dehydrogenase 2 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

26% id,
25% cov

AMB_RS17810 amb3521 WP_070108668.1: methionyl-tRNA formyltransferase
is similar to:
PaperBLAST

ALDH1L1 / O75891: 10-formyltetrahydrofolate dehydrogenase 1 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

27% id,
9% cov

ALDH1L2 / Q3SY69: 10-formyltetrahydrofolate dehydrogenase 2 (EC 3.5.1.10; EC 1.5.1.6) from Homo sapiens

28% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 27 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

175027-175863 (frame -1) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

PGDA1_BACCR / Q81EK9: Peptidoglycan-N-acetylglucosamine deacetylase BC_1960; Peptidoglycan GlcNAc deacetylase; EC 3.5.1.104 from Bacillus cereus
BC_1960 / Q81EK9: peptidoglycan-N-acetylglucosamine deacetylase (EC 3.5.1.104) from Bacillus cereus
Q81EK9: peptidoglycan-N-acetylglucosamine deacetylase (EC 3.5.1.104) from Bacillus cereus
Also see hits to annotated proteins above

24% id,
76% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory