Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 17 curated entries in PaperBLAST's database that match '3.5.1.18' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS19600 amb3874 WP_011386228.1: succinyl-diaminopimelate desuccinylase
is similar to:
PaperBLAST

DAPE_NEIMB / Q9JYL2: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Neisseria meningitidis
Q9JYL2: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Neisseria meningitidis

45% id,
99% cov

DAPE_VIBCH / Q9KQ52: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Vibrio cholerae
Q9KQ52: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Vibrio cholerae

44% id,
99% cov

DAPE_HAEIN / P44514: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Haemophilus influenzae
dapE / P44514: N-succinyl-L,L-diaminopimelate desuccinylase subunit (EC 3.5.1.18) from Haemophilus influenzae
P44514: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Haemophilus influenzae

42% id,
98% cov

More...

AMB_RS11990 amb2375 WP_011384771.1: acetylornithine deacetylase
is similar to:
PaperBLAST

DAPE_VIBCH / Q9KQ52: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Vibrio cholerae
Q9KQ52: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Vibrio cholerae

27% id,
92% cov

Q59284: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Corynebacterium glutamicum

26% id,
95% cov

DAPE_ECOLI / P0AED7: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Escherichia coli
MsgB / b2472: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli
dapE / RF|NP_416967: succinyl-diaminopimelate desuccinylase; EC 3.5.1.18 from Escherichia coli
dapE / P0AED7: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli

26% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory