Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 17 curated entries in PaperBLAST's database that match '3.7.1.3' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS14495 amb2879 WP_011385256.1: aminotransferase class V-fold PLP-dependent enzyme
is similar to:
PaperBLAST

RR42_RS15385: Kynureninase (EC 3.7.1.3) from Cupriavidus basilensis

28% id,
83% cov

AMB_RS15260 amb3029 WP_011385405.1: cysteine desulfurase family protein
is similar to:
PaperBLAST

RR42_RS15385: Kynureninase (EC 3.7.1.3) from Cupriavidus basilensis

28% id,
65% cov

AO353_05935: Kynureninase (EC 3.7.1.3) from Pseudomonas fluorescens

28% id,
60% cov

AMB_RS15255 amb3028 WP_050750732.1: IscS subfamily cysteine desulfurase
is similar to:
PaperBLAST

BPHYT_RS16030: Kynureninase (EC 3.7.1.3) from Burkholderia phytofirmans

26% id,
45% cov

AMB_RS22510 amb4448 WP_011386792.1: alanine--glyoxylate aminotransferase family protein
is similar to:
PaperBLAST

BPHYT_RS16030: Kynureninase (EC 3.7.1.3) from Burkholderia phytofirmans

36% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory