Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 4 curated entries in PaperBLAST's database that match '3.7.1.9' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS14360 amb2852 WP_011385229.1: alpha/beta fold hydrolase
is similar to:
PaperBLAST

G3KFX4: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas sp.

29% id,
90% cov

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

29% id,
90% cov

AMB_RS06715 amb1320 WP_043743648.1: alpha/beta hydrolase
is similar to:
PaperBLAST

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

27% id,
94% cov

G3KFX4: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas sp.

26% id,
94% cov

AMB_RS17485 amb3456 WP_011385816.1: hypothetical protein
is similar to:
PaperBLAST

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

26% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory