Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS05630 amb1108 WP_011383521.1: amino acid decarboxylase
is similar to:		 PaperBLAST

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

 42% id,
99% cov

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

 44% id,
94% cov

DCOS_ECOLI / P24169: Inducible ornithine decarboxylase; EC 4.1.1.17 from Escherichia coli
SpeF / b0693: inducible ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speF / P24169: inducible ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

 45% id,
91% cov

More...

AMB_RS07020 amb1388 WP_011383798.1: type III PLP-dependent enzyme
is similar to:		 PaperBLAST

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

 33% id,
87% cov

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

 32% id,
91% cov

ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa
Q9FPK5: ornithine decarboxylase (EC 4.1.1.17) from Nicotiana glutinosa

 32% id,
85% cov

More...

AMB_RS05600 amb1101 WP_011383514.1: type III PLP-dependent enzyme
is similar to:		 PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

 33% id,
83% cov

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

 32% id,
80% cov

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

 35% id,
73% cov

More...

AMB_RS22725 amb4491 WP_011386835.1: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

 27% id,
78% cov

P90517: ornithine decarboxylase (EC 4.1.1.17) from Crithidia fasciculata

 26% id,
36% cov

DCOR_LEIDO / P27116: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Leishmania donovani
P27116: ornithine decarboxylase (EC 4.1.1.17) from Leishmania donovani

 25% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1505630-1506826 (frame +2) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:		 PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster
Also see hits to annotated proteins above

 31% id,
98% cov

ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa
Q9FPK5: ornithine decarboxylase (EC 4.1.1.17) from Nicotiana glutinosa
Also see hits to annotated proteins above

 32% id,
87% cov

ODC / P50134: ornithine decarboxylase (EC 4.1.1.17) from Datura stramonium
Also see hits to annotated proteins above

 31% id,
87% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory