Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 4 curated entries in PaperBLAST's database that match '4.1.2.20'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS04095 amb0801 WP_011383244.1: 4-hydroxy-2-oxoheptanedioate aldolase
is similar to:
PaperBLAST

GARL_ECOLI / P23522: 5-keto-4-deoxy-D-glucarate aldolase; KDGluc aldolase; KDGlucA; 2-dehydro-3-deoxy-D-glucarate aldolase; 2-keto-3-deoxy-D-glucarate aldolase; 5-dehydro-4-deoxy-D-glucarate aldolase; Alpha-keto-beta-deoxy-D-glucarate aldolase; EC 4.1.2.20 from Escherichia coli
YhaF / b3126: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli
garL / P23522: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli

48% id,
97% cov

AMB_RS12805 amb2543 WP_043744492.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

31% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory