Curated BLAST for Genomes


Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 13 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

fba AMB_RS06985 amb1380 WP_011383790.1: class II fructose-bisphosphate aldolase
is similar to:

IOLJ_BACSU / P42420: 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase; DKGP aldolase; EC from Bacillus subtilis
iolJ / P42420: 5-dehydro-2-deoxyphosphogluconate aldolase (EC from Bacillus subtilis

36% id,
100% cov

PGA1_c07220: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC from Phaeobacter inhibens

36% id,
75% cov

AMB_RS21170 amb4184 WP_011386533.1: adenosine kinase
is similar to:

BPHYT_RS13910: 5-dehydro-2-deoxygluconokinase (EC; possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC from Burkholderia phytofirmans

28% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory