Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 89 curated entries in PaperBLAST's database that match '4.1.2.4'.

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

glyA AMB_RS11815 amb2339 WP_011384736.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

57% id,
98% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

59% id,
95% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

36% id,
91% cov

AMB_RS00885 amb0174 WP_011382621.1: 2,3-epoxybenzoyl-CoA dihydrolase
is similar to:
PaperBLAST

BOXC_AROEV / Q84HH6: Benzoyl-CoA-dihydrodiol lyase; EC 4.1.2.44 from Aromatoleum evansii
boxC / Q84HH6: benzoyl-CoA-dihydrodiol lyase monomer (EC 4.1.2.44) from Azoarcus evansii
Q84HH6: 2,3-epoxybenzoyl-CoA dihydrolase (EC 4.1.2.44) from Azoarcus evansii

55% id,
98% cov

AMB_RS06985 amb1380 WP_011383790.1: fructose-bisphosphate aldolase class II
is similar to:
PaperBLAST

KBAY_ECOLX / Q9KIP8: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli

34% id,
100% cov

KBAY_ECOLI / P0AB74: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
Kba / b3137: tagatose-1,6-bisphosphate aldolase 1 (EC 4.1.2.40) from Escherichia coli
kbaY / RF|NP_417606: tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
kbaY / P0AB76: D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) from Escherichia coli
kbaY / P0AB74: tagatose-1,6-bisphosphate aldolase 1 subunit KbaY (EC 4.1.2.40) from Escherichia coli

34% id,
100% cov

GATY_ECOLI / P0C8J6: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
YegF / b2096: tagatose-1,6-bisphosphate aldolase 2 (EC 4.1.2.40) from Escherichia coli
gatY / P0C8J6: tagatose-1,6-bisphosphate aldolase 2 subunit GatY (EC 4.1.2.40) from Escherichia coli

33% id,
100% cov

More...

AMB_RS19905 amb3933 WP_011386287.1: KpsF/GutQ family sugar-phosphate isomerase
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

23% id,
52% cov

AMB_RS00905 amb0178 WP_011382625.1: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase
is similar to:
PaperBLAST

BOXC_AROEV / Q84HH6: Benzoyl-CoA-dihydrodiol lyase; EC 4.1.2.44 from Aromatoleum evansii
boxC / Q84HH6: benzoyl-CoA-dihydrodiol lyase monomer (EC 4.1.2.44) from Azoarcus evansii
Q84HH6: 2,3-epoxybenzoyl-CoA dihydrolase (EC 4.1.2.44) from Azoarcus evansii

27% id,
45% cov

AMB_RS06980 amb1379 WP_043743679.1: ribulose-phosphate 3-epimerase
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

23% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

199493-201280 (frame +2) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

BOXC_AROEV / Q84HH6: Benzoyl-CoA-dihydrodiol lyase; EC 4.1.2.44 from Aromatoleum evansii
boxC / Q84HH6: benzoyl-CoA-dihydrodiol lyase monomer (EC 4.1.2.44) from Azoarcus evansii
Q84HH6: 2,3-epoxybenzoyl-CoA dihydrolase (EC 4.1.2.44) from Azoarcus evansii
Also see hits to annotated proteins above

55% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory