Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)
Found 21 curated entries in PaperBLAST's database that match '4.1.3.39' as complete word(s).
These curated entries have 13 distinct sequences.
Running ublast with E ≤ 0.01
Found 6 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query
AMB_RS04095 amb0801 WP_011383244.1: 4-hydroxy-2-oxoheptanedioate aldolase is similar to: | PaperBLAST |
BPHF_RHOJR / O05151: 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.39 from Rhodococcus jostii | 58% id, 99% cov |
Q47098: 4-hydroxy-2-oxoheptanedioate aldolase (EC 4.1.2.52); 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli | 60% id, 95% cov |
AMB_RS07875 amb1562 WP_011383972.1: homocitrate synthase is similar to: | PaperBLAST |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis | 29% id, 99% cov |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 29% id, 96% cov |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 28% id, 97% cov |
AMB_RS17765 amb3512 WP_043745065.1: 2-isopropylmalate synthase is similar to: | PaperBLAST |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis | 28% id, 89% cov |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 26% id, 96% cov |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 39% id, 28% cov |
AMB_RS10755 amb2130 WP_011384529.1: citramalate synthase is similar to: | PaperBLAST |
HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans | 26% id, 88% cov |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 29% id, 76% cov |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 25% id, 88% cov |
AMB_RS03460 amb0673 WP_011383116.1: hydroxymethylglutaryl-CoA lyase is similar to: | PaperBLAST |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 24% id, 75% cov |
AMB_RS17550 amb3468 WP_011385828.1: 2-isopropylmalate synthase is similar to: | PaperBLAST |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 31% id, 33% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 6 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory