Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 94 curated entries in PaperBLAST's database that match '4.1.99.1'.

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS01125 amb0221 WP_043743084.1: phosphomethylpyrimidine synthase
is similar to:
PaperBLAST

THIC_CAUVC / Q9A6Q5: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Caulobacter vibrioides
thiC / Q9A6Q5: HMP-P synthase monomer (EC 4.1.99.17) from Caulobacter vibrioides
Q9A6Q5: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Caulobacter vibrioides

72% id,
99% cov

THIC_BACSU / P45740: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Bacillus subtilis
thiC / P45740: phosphomethylpyrimidine synthase monomer (EC 4.1.99.17) from Bacillus subtilis

69% id,
97% cov

THIC_SALTY / Q9L9I7: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Salmonella typhimurium
Q9L9I7: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Salmonella enterica

68% id,
96% cov

More...

AMB_RS11835 amb2344 WP_050750705.1: 3,4-dihydroxy-2-butanone-4-phosphate synthase
is similar to:
PaperBLAST

RIBB_ECOLI / P0A7J0: 3,4-dihydroxy-2-butanone 4-phosphate synthase; DHBP synthase; EC 4.1.99.12 from Escherichia coli
LuxH / b3041: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
ribB / GB|AAN44559.1: 3,4-dihydroxy-2-butanone 4-phosphate synthase; EC 4.1.99.12 from Shigella flexneri
ribB / P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli

47% id,
98% cov

P66032: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Salmonella enterica

47% id,
98% cov

Q9KKP2: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Vibrio cholerae

46% id,
99% cov

More...

AMB_RS00110 amb0020 WP_011382468.1: GTP cyclohydrolase II
is similar to:
PaperBLAST

A5U2B7: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Mycobacterium tuberculosis

35% id,
94% cov

RIBA1_ARATH / P47924: Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic; AtRIBA1; EC 4.1.99.12; EC 3.5.4.25 from Arabidopsis thaliana
RIBBA / P47924: chloroplastic riboflavin biosynthesis protein ribBA (EC 3.5.4.25; EC 4.1.99.12) from Arabidopsis thaliana
P47924: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Arabidopsis thaliana

40% id,
49% cov

RIBA2_ARATH / Q6NLQ7: Monofunctional riboflavin biosynthesis protein RIBA 2, chloroplastic; EC 4.1.99.12 from Arabidopsis thaliana
Q6NLQ7: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Arabidopsis thaliana

25% id,
78% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory