Curated BLAST for Genomes


Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 5 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS12770 amb2536 WP_011384917.1: dihydroxy-acid dehydratase
is similar to:

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC from Zymomonas mobilis

31% id,
88% cov

Q1PAG1: phosphogluconate dehydratase (EC from Pseudomonas chlororaphis

32% id,
52% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC from Escherichia coli

28% id,
53% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory