Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 7 curated entries in PaperBLAST's database that match '4.3.1.1' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS18480 amb3650 WP_011386008.1: class II fumarate hydratase
is similar to:
PaperBLAST

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

41% id,
98% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

40% id,
98% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

43% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory