Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 8 curated entries in PaperBLAST's database that match '4.3.1.9' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

trxB AMB_RS03410 amb0663 WP_011383106.1: thioredoxin-disulfide reductase
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

59% id,
96% cov

AMB_RS19695 amb3892 WP_011386246.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

26% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory