Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 2 curated entries in PaperBLAST's database that match '5.3.2.8' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS01270 amb0250 WP_011382697.1: 4-oxalomesaconate tautomerase
is similar to:
PaperBLAST

GALD_PSEPK / Q88JY0: 4-oxalomesaconate tautomerase; Gallate degradation protein D; EC 5.3.2.8 from Pseudomonas putida
gllD / Q88JY0: 4-oxalomesaconate tautomerase (EC 5.3.2.8) from Pseudomonas putida

55% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory