Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 5 curated entries in PaperBLAST's database that match '5.3.3.18' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS00905 amb0178 WP_011382625.1: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase
is similar to:
PaperBLAST

PAAG_ECOLI / P77467: 1,2-epoxyphenylacetyl-CoA isomerase; EC 5.3.3.18 from Escherichia coli
YdbT / b1394: putative ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (EC 5.3.3.18) from Escherichia coli
P77467: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Escherichia coli

58% id,
100% cov

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

61% id,
94% cov

Q5SLK3: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Thermus thermophilus

47% id,
100% cov

AMB_RS20905 amb4133 WP_011386482.1: enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

Q5SLK3: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Thermus thermophilus

37% id,
99% cov

PAAG_ECOLI / P77467: 1,2-epoxyphenylacetyl-CoA isomerase; EC 5.3.3.18 from Escherichia coli
YdbT / b1394: putative ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (EC 5.3.3.18) from Escherichia coli
P77467: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Escherichia coli

37% id,
99% cov

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

32% id,
94% cov

AMB_RS13070 amb2597 WP_011384978.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

38% id,
94% cov

PAAG_ECOLI / P77467: 1,2-epoxyphenylacetyl-CoA isomerase; EC 5.3.3.18 from Escherichia coli
YdbT / b1394: putative ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (EC 5.3.3.18) from Escherichia coli
P77467: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Escherichia coli

35% id,
100% cov

Q5SLK3: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Thermus thermophilus

34% id,
100% cov

AMB_RS13030 amb2589 WP_011384970.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q5SLK3: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Thermus thermophilus

36% id,
98% cov

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

33% id,
99% cov

PAAG_ECOLI / P77467: 1,2-epoxyphenylacetyl-CoA isomerase; EC 5.3.3.18 from Escherichia coli
YdbT / b1394: putative ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (EC 5.3.3.18) from Escherichia coli
P77467: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Escherichia coli

31% id,
97% cov

AMB_RS03470 amb0675 WP_011383118.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q5SLK3: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Thermus thermophilus

34% id,
98% cov

PAAG_ECOLI / P77467: 1,2-epoxyphenylacetyl-CoA isomerase; EC 5.3.3.18 from Escherichia coli
YdbT / b1394: putative ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (EC 5.3.3.18) from Escherichia coli
P77467: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Escherichia coli

31% id,
98% cov

AMB_RS03265 amb0634 WP_011383077.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

33% id,
100% cov

PAAG_ECOLI / P77467: 1,2-epoxyphenylacetyl-CoA isomerase; EC 5.3.3.18 from Escherichia coli
YdbT / b1394: putative ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (EC 5.3.3.18) from Escherichia coli
P77467: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Escherichia coli

30% id,
100% cov

AMB_RS04340 amb0852 WP_011383294.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

33% id,
98% cov

PAAG_ECOLI / P77467: 1,2-epoxyphenylacetyl-CoA isomerase; EC 5.3.3.18 from Escherichia coli
YdbT / b1394: putative ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (EC 5.3.3.18) from Escherichia coli
P77467: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Escherichia coli

32% id,
98% cov

AMB_RS13040 amb2591 WP_011384972.1: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

33% id,
94% cov

Q5SLK3: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Thermus thermophilus

35% id,
80% cov

AMB_RS06685 amb1315 WP_011383725.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

33% id,
93% cov

Q5SLK3: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Thermus thermophilus

30% id,
97% cov

PAAG_ECOLI / P77467: 1,2-epoxyphenylacetyl-CoA isomerase; EC 5.3.3.18 from Escherichia coli
YdbT / b1394: putative ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (EC 5.3.3.18) from Escherichia coli
P77467: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Escherichia coli

29% id,
100% cov

AMB_RS11335 amb2242 WP_043744278.1: methylmalonyl-CoA decarboxylase
is similar to:
PaperBLAST

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

30% id,
95% cov

Q5SLK3: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Thermus thermophilus

26% id,
100% cov

PAAG_ECOLI / P77467: 1,2-epoxyphenylacetyl-CoA isomerase; EC 5.3.3.18 from Escherichia coli
YdbT / b1394: putative ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (EC 5.3.3.18) from Escherichia coli
P77467: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Escherichia coli

27% id,
96% cov

AMB_RS15050 amb2990 WP_011385366.1: multifunctional fatty acid oxidation complex subunit alpha
is similar to:
PaperBLAST

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

28% id,
95% cov

AMB_RS03645 amb0710 WP_043743342.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q5SLK3: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Thermus thermophilus

27% id,
96% cov

AMB_RS18135 amb3583 WP_043745113.1: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

H281DRAFT_05722: 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) from Paraburkholderia bryophila

26% id,
87% cov

AMB_RS10830 amb2143 WP_011384542.1: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase
is similar to:
PaperBLAST

PAAG_ECOLI / P77467: 1,2-epoxyphenylacetyl-CoA isomerase; EC 5.3.3.18 from Escherichia coli
YdbT / b1394: putative ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) (EC 5.3.3.18) from Escherichia coli
P77467: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) from Escherichia coli

29% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory