Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 88 curated entries in PaperBLAST's database that match '5.4.99.5'.

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS21090 amb4167 WP_011386516.1: prephenate dehydratase
is similar to:
PaperBLAST

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

36% id,
72% cov

C7EXK8: prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Escherichia coli

35% id,
72% cov

CMPDT_BUCAI / P57472: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Buchnera aphidicola

30% id,
70% cov

More...

AMB_RS09175 amb1813 WP_011384218.1: anthranilate synthase component I
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

35% id,
58% cov

AMB_RS13865 amb2757 WP_011385136.1: biotin synthase
is similar to:
PaperBLAST

PYLB_METAC / Q8TUB9: 3-methylornithine synthase; (2R,3R)-3-methylornithine synthase; (3R)-3-methyl-D-ornithine synthase; Pyrrolysine biosynthesis protein PylB; EC 5.4.99.58 from Methanosarcina acetivorans

26% id,
78% cov

AMB_RS09220 amb1822 WP_011384227.1: 3-deoxy-8-phosphooctulonate synthase
is similar to:
PaperBLAST

P39912: chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

32% id,
62% cov

AMB_RS20105 amb3973 WP_043745372.1: chorismate mutase
is similar to:
PaperBLAST

CMPDT_PSEST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Pseudomonas stutzeri

28% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1482798-1484606 (frame +3) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

DAMS_SOLLC / E7DN64: Delta-amyrin synthase; Alpha-amyrin synthase; Beta-amyrin synthase; Triterpenoid synthase 2; SlTTS2; EC 5.4.99.55; EC 5.4.99.40; EC 5.4.99.39 from Solanum lycopersicum
TTS2 / E7DN64: δ-amyrin synthase (EC 5.4.99.55; EC 5.4.99.40; EC 5.4.99.39) from Solanum lycopersicum

33% id,
30% cov

A0A2R3ZF24: friedelin synthase (EC 5.4.99.50) from Monteverdia ilicifolia

34% id,
29% cov

A0A1L3HE30: friedelin synthase (EC 5.4.99.50) from Monteverdia ilicifolia

34% id,
29% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory