Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 23 curated entries in PaperBLAST's database that match '6.1.1.23' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

aspS AMB_RS14265 amb2837 WP_011385213.1: aspartate--tRNA ligase
is similar to:		 PaperBLAST

CCNA_01969: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Caulobacter crescentus

 62% id,
99% cov

Dshi_2633: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Dinoroseobacter shibae

 60% id,
100% cov

PGA1_c24530: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Phaeobacter inhibens

 59% id,
100% cov

More...

epmA AMB_RS06525 amb1283 WP_011383695.1: EF-P lysine aminoacylase EpmA
is similar to:		 PaperBLAST

aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans

 28% id,
36% cov

Synpcc7942_1313: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Synechococcus elongatus

 31% id,
30% cov

aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans

 31% id,
27% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory