Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)
Found 2 curated entries in PaperBLAST's database that match 'L-2,4-diketo-3-deoxyrhamnonate hydrolase' as complete word(s).
These curated entries have 2 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query
| AMB_RS14215 amb2827 WP_011385204.1: fumarylacetoacetate hydrolase family protein is similar to: | PaperBLAST |
SM_b21112: L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase from Sinorhizobium meliloti | 38% id, 88% cov |
8gsrA / Q1NEI7: Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) | 34% id, 90% cov |
| AMB_RS04120 amb0806 WP_011383249.1: fumarylacetoacetate hydrolase family protein is similar to: | PaperBLAST |
SM_b21112: L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase from Sinorhizobium meliloti | 38% id, 74% cov |
8gsrA / Q1NEI7: Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) | 35% id, 80% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 863970-866723 (frame -2) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence is similar to: | PaperBLAST |
SM_b21112: L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase from Sinorhizobium meliloti | 34% id, 95% cov |
8gsrA / Q1NEI7: Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) | 33% id, 93% cov |
Lawrence Berkeley National Laboratory