Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 1 curated entries in PaperBLAST's database that match 'acetohydroxyacid synthase subunit B' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS17740 amb3507 WP_011385867.1: acetolactate synthase 3 large subunit
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

56% id,
97% cov

AMB_RS04050 amb0792 WP_011383235.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

29% id,
96% cov

AMB_RS12840 amb2550 WP_011384931.1: thiamine pyrophosphate protein
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

29% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3853901-3855673 (frame +2) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

56% id,
99% cov

2732342-2734660 (frame +2) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

29% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory