Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 2 curated entries in PaperBLAST's database that match 'citramalate isomerase small subunit' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS10755 amb2130 WP_011384529.1: citramalate synthase
is similar to:
PaperBLAST

DVU1914: isopropylmalate/citramalate isomerase small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

45% id,
99% cov

AMB_RS17765 amb3512 WP_043745065.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

DVU1914: isopropylmalate/citramalate isomerase small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

29% id,
98% cov

AMB_RS20565 amb4068 WP_011386419.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

LEUD_METJA / Q58673: Isopropylmalate/citramalate isomerase small subunit; (R)-2-methylmalate dehydratase; (R)-citramalate dehydratase; 3-isopropylmalate dehydratase; Alpha-isopropylmalate dehydratase; Citraconate hydratase; Isopropylmalate isomerase; IPMI; Maleate hydratase; Malease; EC 4.2.1.33; EC 4.2.1.35; EC 4.2.1.31 from Methanocaldococcus jannaschii

37% id,
72% cov

AMB_RS17550 amb3468 WP_011385828.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

DVU1914: isopropylmalate/citramalate isomerase small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

22% id,
90% cov

AMB_RS07875 amb1562 WP_011383972.1: homocitrate synthase
is similar to:
PaperBLAST

DVU1914: isopropylmalate/citramalate isomerase small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

29% id,
68% cov

AMB_RS18485 amb3651 WP_011386009.1: aconitate hydratase AcnA
is similar to:
PaperBLAST

LEUD_METJA / Q58673: Isopropylmalate/citramalate isomerase small subunit; (R)-2-methylmalate dehydratase; (R)-citramalate dehydratase; 3-isopropylmalate dehydratase; Alpha-isopropylmalate dehydratase; Citraconate hydratase; Isopropylmalate isomerase; IPMI; Maleate hydratase; Malease; EC 4.2.1.33; EC 4.2.1.35; EC 4.2.1.31 from Methanocaldococcus jannaschii

25% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory