Curated BLAST for Genomes

 

Curated BLAST

Searching in Azorhizobium caulinodans ORS 571 (GCF_000010525.1)

Found 73 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 53 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Azorhizobium caulinodans ORS 571, or try another query

glyA AZC_RS06490 AZC_1261 WP_012169792.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

72% id,
100% cov

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

65% id,
100% cov

B4ECY9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia cenocepacia

66% id,
99% cov

More...

glyA AZC_RS15745 AZC_3051 WP_043879456.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

69% id,
96% cov

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

70% id,
95% cov

GLYA_BACSU / P39148: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Bacillus subtilis

62% id,
100% cov

More...

AZC_RS17845 AZC_3470 WP_012171993.1: DegT/DnrJ/EryC1/StrS family aminotransferase
is similar to:
PaperBLAST

GLYA_THET8 / Q5SI56: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus
Q5SI56: glycine hydroxymethyltransferase (EC 2.1.2.1) from Thermus thermophilus

26% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory