Curated BLAST for Genomes

 

Curated BLAST

Searching in Azorhizobium caulinodans ORS 571 (GCF_000010525.1)

Found 19 curated entries in PaperBLAST's database that match '4.3.2.1' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Azorhizobium caulinodans ORS 571, or try another query

argH AZC_RS23880 AZC_4662 WP_012173181.1: argininosuccinate lyase
is similar to:
PaperBLAST

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

48% id,
100% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

48% id,
99% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

46% id,
97% cov

More...

argH AZC_RS19880 AZC_3873 WP_043880551.1: argininosuccinate lyase
is similar to:
PaperBLAST

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

35% id,
94% cov

Q9P870: argininosuccinate lyase (EC 4.3.2.1) from Agaricus bisporus

35% id,
92% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

35% id,
91% cov

More...

AZC_RS15675 AZC_3037 WP_012171561.1: lyase family protein
is similar to:
PaperBLAST

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

28% id,
90% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

25% id,
95% cov

ARLY_YEAST / P04076: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Saccharomyces cerevisiae

26% id,
88% cov

More...

fumC AZC_RS09855 AZC_1901 WP_012170429.1: class II fumarate hydratase
is similar to:
PaperBLAST

ARLY_YEAST / P04076: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Saccharomyces cerevisiae

24% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory