Curated BLAST for Genomes

 

Curated BLAST

Searching in Dehalococcoides mccartyi 195 (GCF_000011905.1)

Found 8 curated entries in PaperBLAST's database that match '1.3.1.13' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dehalococcoides mccartyi 195, or try another query

DET_RS02495 DET0460 WP_010936237.1: prephenate dehydrogenase
is similar to:
PaperBLAST

A0A101IGG2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Methanothrix harundinacea

29% id,
88% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

433427-434365 (frame -2) on NC_002936.3 Dehalococcoides mccartyi 195, complete sequence
is similar to:
PaperBLAST

A0A101IGG2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Methanothrix harundinacea
Also see hits to annotated proteins above

29% id,
91% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory