Curated BLAST for Genomes

 

Curated BLAST

Searching in Dehalococcoides mccartyi 195 (GCF_000011905.1)

Found 51 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Dehalococcoides mccartyi 195, or try another query

gltA DET_RS00175 DET0038 WP_010935848.1: NADPH-dependent glutamate synthase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
75% cov

trxB DET_RS02900 DET0542 WP_010936319.1: thioredoxin-disulfide reductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
65% cov

O59088: proline dehydrogenase (subunit 2/2) (EC 1.5.5.2) from Pyrococcus horikoshii

45% id,
8% cov

DET_RS05850 DET1131 WP_010936824.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q5JFG2: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

37% id,
22% cov

Q76M73: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

35% id,
20% cov

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

36% id,
19% cov

DET_RS03825 DET0732 WP_010936470.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

48% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory