Curated BLAST for Genomes

 

Curated BLAST

Searching in Dehalococcoides mccartyi 195 (GCF_000011905.1)

Found 80 curated entries in PaperBLAST's database that match '2.5.1.47' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dehalococcoides mccartyi 195, or try another query

cysK DET_RS05870 DET1135 WP_010936828.1: cysteine synthase A
is similar to:
PaperBLAST

CYSK_MYCTU / P9WP55: O-acetylserine sulfhydrylase; OAS sulfhydrylase; OASS; Cysteine synthase A; CSase A; O-acetylserine (thiol)-lyase A; OAS-TL A; O-acetylserine-specific cysteine synthase; Sulfide-dependent cysteine synthase; EC 2.5.1.47 from Mycobacterium tuberculosis
P9WP55: cysteine synthase (EC 2.5.1.47) from Mycobacterium tuberculosis

61% id,
98% cov

A8YBP8: cysteine synthase (EC 2.5.1.47) from Microcystis aeruginosa

58% id,
98% cov

CYSK_BACSU / P37887: Cysteine synthase; CSase; O-acetylserine (thiol)-lyase; OAS-TL; Superoxide-inducible protein 11; SOI11; EC 2.5.1.47 from Bacillus subtilis
P37887: cysteine synthase (EC 2.5.1.47) from Bacillus subtilis

56% id,
98% cov

More...

thrC DET_RS06215 DET1205 WP_010936895.1: threonine synthase
is similar to:
PaperBLAST

CS1 / A2EI82: O-phosphoserine sulfhydrylase monomer (EC 2.5.1.47; EC 2.5.1.65) from Trichomonas vaginalis

28% id,
88% cov

A2GMG5: cysteine synthase (EC 2.5.1.47) from Trichomonas vaginalis

27% id,
88% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory