Curated BLAST for Genomes

 

Curated BLAST

Searching in Dehalococcoides mccartyi 195 (GCF_000011905.1)

Found 75 curated entries in PaperBLAST's database that match '2.6.1.42' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dehalococcoides mccartyi 195, or try another query

DET_RS00045 DET0009 WP_010935819.1: branched-chain amino acid transaminase
is similar to:		 PaperBLAST

F2L0W0: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermoproteus uzoniensis

 45% id,
98% cov

F0QW25: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Vulcanisaeta moutnovskia

 43% id,
96% cov

A6UP94: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Methanococcus vannielii

 41% id,
98% cov

More...

DET_RS06870 DET1342 WP_010937030.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

 28% id,
86% cov

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

 26% id,
92% cov

hisC DET_RS04395 DET0843 WP_010936571.1: histidinol-phosphate transaminase
is similar to:		 PaperBLAST

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

 27% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory