Curated BLAST for Genomes

 

Curated BLAST

Searching in Dehalococcoides mccartyi 195 (GCF_000011905.1)

Found 14 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dehalococcoides mccartyi 195, or try another query

ilvD DET_RS04350 DET0834 WP_010936562.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum
I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum

39% id,
92% cov

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

39% id,
92% cov

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

39% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory