Curated BLAST for Genomes

 

Curated BLAST

Searching in Dehalococcoides mccartyi 195 (GCF_000011905.1)

Found 34 curated entries in PaperBLAST's database that match '5.3.1.8' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dehalococcoides mccartyi 195, or try another query

glmM DET_RS02825 DET0528 WP_010936305.1: phosphoglucosamine mutase
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

30% id,
96% cov

DET_RS02730 DET0510 WP_010936287.1: phosphoglucomutase/phosphomannomutase family protein
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

29% id,
98% cov

DET_RS02725 DET0509 WP_010936286.1: bifunctional phosphoglucose/phosphomannose isomerase
is similar to:
PaperBLAST

PGMI_THEAC / Q9HIC2: Bifunctional phosphoglucose/phosphomannose isomerase; Glucose-6-phosphate isomerase; GPI; Mannose-6-phosphate isomerase; Phosphoglucose isomerase; PGI; Phosphomannose isomerase; PMI; EC 5.3.1.9; EC 5.3.1.8 from Thermoplasma acidophilum

29% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory