Curated BLAST for Genomes

 

Curated BLAST

Searching in Geobacter metallireducens GS-15 (GCF_000012925.1)

Found 18 curated entries in PaperBLAST's database that match '2.1.1.13' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Geobacter metallireducens GS-15, or try another query

GMET_RS02740 Gmet_0549 WP_004512245.1: homocysteine S-methyltransferase family protein
is similar to:		 PaperBLAST

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 45% id,
99% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 44% id,
99% cov

PGA1_c16040: Methionine synthase component, pterin-binding domain (EC:2.1.1.13) from Phaeobacter inhibens

 37% id,
98% cov

More...

GMET_RS02515 Gmet_0504 WP_004512200.1: bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase
is similar to:		 PaperBLAST

PGA1_c13370: Methionine synthase component, methyltransferase domain (EC:2.1.1.13) from Phaeobacter inhibens

 34% id,
94% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 34% id,
53% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 38% id,
38% cov

More...

GMET_RS14585 Gmet_2906 WP_035468651.1: ASKHA domain-containing protein
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

 31% id,
61% cov

GMET_RS13790 Gmet_2751 WP_049756817.1: cobalamin-dependent protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 27% id,
65% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 33% id,
26% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 29% id,
27% cov

More...

icmF GMET_RS08670 Gmet_1722 WP_004513381.1: fused isobutyryl-CoA mutase/GTPase IcmF
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 23% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3289229-3290671 (frame -1) on NC_007517.1 Geobacter metallireducens GS-15, complete sequence
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens
Also see hits to annotated proteins above

 31% id,
63% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory