Curated BLAST for Genomes

 

Curated BLAST

Searching in Geobacter metallireducens GS-15 (GCF_000012925.1)

Found 23 curated entries in PaperBLAST's database that match '2.6.1.9' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Geobacter metallireducens GS-15, or try another query

hisC GMET_RS01920 Gmet_0385 WP_004512357.1: histidinol-phosphate transaminase
is similar to:		 PaperBLAST

HP15_2427: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Marinobacter adhaerens

 38% id,
96% cov

PP_0967: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Pseudomonas putida

 37% id,
98% cov

Psest_3297: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Pseudomonas stutzeri

 37% id,
97% cov

More...

cobD GMET_RS02435 Gmet_0487 WP_011365674.1: threonine-phosphate decarboxylase CobD
is similar to:		 PaperBLAST

DVU1029: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Desulfovibrio vulgaris

 33% id,
91% cov

DvMF_0908: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Desulfovibrio vulgaris

 33% id,
90% cov

PP_0967: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Pseudomonas putida

 30% id,
93% cov

More...

GMET_RS01070 Gmet_0213 WP_004512802.1: LL-diaminopimelate aminotransferase
is similar to:		 PaperBLAST

hisC / P17731: histidinol-phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) (EC 2.6.1.1; EC 2.6.1.9) from Bacillus subtilis

 22% id,
85% cov

BT0202: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Bacteroides thetaiotaomicron

 25% id,
71% cov

GMET_RS03670 Gmet_0732 WP_004514449.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

hisC / P17731: histidinol-phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) (EC 2.6.1.1; EC 2.6.1.9) from Bacillus subtilis

 25% id,
74% cov

HIS8_TOBAC / O82030: Histidinol-phosphate aminotransferase, chloroplastic; Imidazole acetol-phosphate transaminase; EC 2.6.1.9 from Nicotiana tabacum
O82030: histidinol-phosphate transaminase (EC 2.6.1.9) from Nicotiana tabacum

 26% id,
61% cov

BT0202: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Bacteroides thetaiotaomicron

 22% id,
68% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory