Curated BLAST for Genomes

 

Curated BLAST

Searching in Geobacter metallireducens GS-15 (GCF_000012925.1)

Found 40 curated entries in PaperBLAST's database that match '4.3.3.7' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Geobacter metallireducens GS-15, or try another query

dapA GMET_RS01060 Gmet_0211 WP_004512800.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

DAPA_METJA / Q57695: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Methanocaldococcus jannaschii

53% id,
100% cov

Q8RBI5: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Caldanaerobacter subterraneus

52% id,
98% cov

DAPA_PSEAE / Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Pseudomonas aeruginosa
Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Pseudomonas aeruginosa

52% id,
98% cov

More...

dapB GMET_RS01065 Gmet_0212 WP_004512801.1: 4-hydroxy-tetrahydrodipicolinate reductase
is similar to:
PaperBLAST

Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis

30% id,
98% cov

GMET_RS18180 Gmet_2230 WP_011365985.1: hypothetical protein
is similar to:
PaperBLAST

Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis

33% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory