Curated BLAST for Genomes

 

Curated BLAST

Searching in Geobacter metallireducens GS-15 (GCF_000012925.1)

Found 23 curated entries in PaperBLAST's database that match '6.1.1.23' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Geobacter metallireducens GS-15, or try another query

aspS GMET_RS06835 Gmet_1357 WP_004513151.1: aspartate--tRNA ligase
is similar to:		 PaperBLAST

Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans

 58% id,
98% cov

DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris

 60% id,
95% cov

O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis

 55% id,
99% cov

More...

asnS GMET_RS12145 Gmet_2412 WP_004512488.1: asparagine--tRNA ligase
is similar to:		 PaperBLAST

SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum
O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum

 30% id,
96% cov

SYDND_METTH / O26328: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus
O26328: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus

 30% id,
95% cov

SYDND_METMA / Q8Q0R2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei

 26% id,
95% cov

More...

lysS GMET_RS11895 Gmet_2360 WP_004513260.1: lysine--tRNA ligase
is similar to:		 PaperBLAST

SYDND_METMA / Q8Q0R2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei

 29% id,
98% cov

SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum
O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum

 28% id,
95% cov

SYDND_METTH / O26328: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus
O26328: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus

 27% id,
99% cov

More...

epmA GMET_RS09260 Gmet_1839 WP_004512007.1: EF-P lysine aminoacylase EpmA
is similar to:		 PaperBLAST

aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans

 28% id,
30% cov

Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus

 30% id,
24% cov

aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans

 24% id,
26% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory