Curated BLAST for Genomes

 

Curated BLAST

Searching in Geobacter metallireducens GS-15 (GCF_000012925.1)

Found 22 curated entries in PaperBLAST's database that match 'argininosuccinate lyase' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Geobacter metallireducens GS-15, or try another query

argH GMET_RS01050 Gmet_0209 WP_004512798.1: argininosuccinate lyase
is similar to:
PaperBLAST

argH / BAC65282.1: argininosuccinate lyase from Burkholderia multivorans

58% id,
99% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

55% id,
98% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

51% id,
99% cov

More...

purB GMET_RS09815 Gmet_1943 WP_004511900.1: adenylosuccinate lyase
is similar to:
PaperBLAST

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

23% id,
87% cov

GMET_RS15445 Gmet_3082 WP_004514536.1: aspartate ammonia-lyase
is similar to:
PaperBLAST

ARG7 / CAA09001.1: argininosuccinate lyase from Chlamydomonas reinhardtii

24% id,
72% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory