Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurimonas denitrificans DSM 1251 (GCF_000012965.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfurimonas denitrificans DSM 1251, or try another query

thrB SUDEN_RS03530 Suden_0674 WP_011372307.1: homoserine kinase
is similar to:
PaperBLAST

P07128: homoserine kinase (EC 2.7.1.39) from Corynebacterium glutamicum

31% id,
94% cov

KHSE_METMP / Q6M0H5: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Methanococcus maripaludis

29% id,
88% cov

Q4Q6Y2: homoserine kinase (EC 2.7.1.39) from Leishmania major

29% id,
85% cov

More...

SUDEN_RS10770 Suden_2072 WP_011373686.1: phosphotransferase
is similar to:
PaperBLAST

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Pseudomonas aeruginosa

31% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

687670-688638 (frame +1) on NC_007575.1 Sulfurimonas denitrificans DSM 1251, complete sequence
is similar to:
PaperBLAST

P07128: homoserine kinase (EC 2.7.1.39) from Corynebacterium glutamicum
Also see hits to annotated proteins above

31% id,
98% cov

KHSE_ARATH / Q8L7R2: Homoserine kinase; Protein DOWNY MILDEW RESISTANT 1; EC 2.7.1.39 from Arabidopsis thaliana
hsk / Q8L7R2: homoserine kinase (EC 2.7.1.39) from Arabidopsis thaliana
Q8L7R2: homoserine kinase (EC 2.7.1.39) from Arabidopsis thaliana
Also see hits to annotated proteins above

32% id,
79% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory