Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurimonas denitrificans DSM 1251 (GCF_000012965.1)

Found 66 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 52 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sulfurimonas denitrificans DSM 1251, or try another query

acnB SUDEN_RS05460 Suden_1040 WP_011372670.1: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
is similar to:
PaperBLAST

A0A2X5AHR8: aconitate hydratase (EC 4.2.1.3) from Helicobacter pylori

64% id,
100% cov

acnB / P56418: aconitase (EC 4.2.1.3) from Helicobacter pylori

64% id,
100% cov

ACNB_ECOLI / P36683: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli
acnB / GB|AAZ86920.1: aconitate hydratas; EC 4.2.1.3 from Escherichia coli
P36683: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

64% id,
98% cov

More...

SUDEN_RS10470 Suden_2017 WP_011373631.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

ACON_BOVIN / P20004: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Bos taurus

29% id,
57% cov

ACON_RAT / Q9ER34: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Rattus norvegicus
Q9ER34: aconitate hydratase (EC 4.2.1.3) from Rattus norvegicus

29% id,
57% cov

ACON_PIG / P16276: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Sus scrofa

29% id,
57% cov

More...

SUDEN_RS05785 Suden_1102 WP_011372732.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

28% id,
19% cov

ACON_HUMAN / Q99798: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Homo sapiens
Q99798: aconitate hydratase (EC 4.2.1.3) from Homo sapiens

27% id,
19% cov

ACO1_ARATH / Q42560: Aconitate hydratase 1; Aconitase 1; Citrate hydro-lyase 1; EC 4.2.1.3 from Arabidopsis thaliana

29% id,
18% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory