Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurimonas denitrificans DSM 1251 (GCF_000012965.1)

Found 39 curated entries in PaperBLAST's database that match '6.3.5.4' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sulfurimonas denitrificans DSM 1251, or try another query

asnB SUDEN_RS00825 Suden_0163 WP_011371799.1: asparagine synthase (glutamine-hydrolyzing)
is similar to:
PaperBLAST

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

32% id,
96% cov

ASNS2_YEAST / P49090: Asparagine synthetase [glutamine-hydrolyzing] 2; Glutamine-dependent asparagine synthetase 2; EC 6.3.5.4 from Saccharomyces cerevisiae

28% id,
86% cov

F2DDF6: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Hordeum vulgare

31% id,
75% cov

More...

asnB SUDEN_RS00940 Suden_0186 WP_011371822.1: asparagine synthase (glutamine-hydrolyzing)
is similar to:
PaperBLAST

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

31% id,
93% cov

ASNH_MYCBO / P64248: Putative asparagine synthetase [glutamine-hydrolyzing]; EC 6.3.5.4 from Mycobacterium bovis

29% id,
92% cov

ASNS_HUMAN / P08243: Asparagine synthetase [glutamine-hydrolyzing]; Cell cycle control protein TS11; Glutamine-dependent asparagine synthetase; EC 6.3.5.4 from Homo sapiens
P08243: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Homo sapiens

27% id,
91% cov

More...

asnB SUDEN_RS01010 Suden_0200 WP_011371836.1: asparagine synthase (glutamine-hydrolyzing)
is similar to:
PaperBLAST

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

33% id,
62% cov

Asns / P49088: asparagine synthetase subunit (EC 6.3.5.4) from Rattus norvegicus

29% id,
68% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

37% id,
53% cov

More...

glmS SUDEN_RS07745 Suden_1483 WP_011373112.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

24% id,
38% cov

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

27% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory