Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Rhodospirillum rubrum ATCC 11170 (GCF_000013085.1)

Found 58 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Rhodospirillum rubrum ATCC 11170, or try another query

RRU_RS18660 Rru_A3613 WP_011391360.1: shikimate dehydrogenase is similar to:	PaperBLAST
CCNA_00003: shikimate dehydrogenase (EC 1.1.1.25) from Caulobacter crescentus	43% id, 96% cov
AROE_THET8 / Q5SJF8: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus Q5SJF8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermus thermophilus	40% id, 98% cov
AROE_GEOKA / Q5KWX7: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Geobacillus kaustophilus	41% id, 95% cov
AROE_ECOLI / P15770: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli AroE / b3281: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli aroE / P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli P15770: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Escherichia coli	38% id, 96% cov
Q88K85: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida	38% id, 94% cov
O27957: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Archaeoglobus fulgidus	36% id, 97% cov
AROE_METJA / Q58484: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii aroE / Q58484: shikimate dehydrogenase monomer (EC 1.1.1.25) from Methanocaldococcus jannaschii	35% id, 99% cov
CA265_RS19745: shikimate dehydrogenase (EC 1.1.1.25) from Pedobacter sp.	35% id, 99% cov
Q88RQ5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida	36% id, 95% cov
Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida	34% id, 99% cov
AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus O67049: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aquifex aeolicus	35% id, 94% cov
P0A6D5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Escherichia coli	35% id, 94% cov
Q9WYI1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermotoga maritima	35% id, 94% cov
A0A045GU47: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Mycobacterium tuberculosis A5U5Q2: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Mycobacterium tuberculosis P95001: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Mycobacterium tuberculosis	33% id, 97% cov
AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae	34% id, 94% cov
AROE_STAEQ / Q5HNV1: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis Q5HNV1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Staphylococcus epidermidis	32% id, 97% cov
A4QEK4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Corynebacterium glutamicum	33% id, 93% cov
Q88IJ7: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida	32% id, 94% cov
Q88GF6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida	33% id, 90% cov
AROE_HELPX / Q56S04: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori Q56S04: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Helicobacter pylori	31% id, 93% cov
AROE_HELPY / P56119: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori	31% id, 93% cov
BT4215: shikimate dehydrogenase (EC 1.1.1.25) from Bacteroides thetaiotaomicron	29% id, 98% cov
A0A168S2B8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera	36% id, 52% cov
A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis	36% id, 50% cov
A0A5H2WVH6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Eucalyptus camaldulensis	35% id, 52% cov
A0A168S2G5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera	34% id, 52% cov
A0A168S2H6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera	32% id, 52% cov
A0A6P8EJ47: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Punica granatum	33% id, 50% cov
A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis	32% id, 52% cov
DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana Q9SQT8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana	36% id, 45% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	31% id, 17% cov
More...

RRU_RS06535 Rru_A1250 WP_011389005.1: serine hydrolase is similar to:	PaperBLAST
A4QB65: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum	28% id, 46% cov

aroB RRU_RS19305 Rru_A3741 WP_011391488.1: 3-dehydroquinate synthase is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans	38% id, 22% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	35% id, 20% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	41% id, 8% cov
Q6W3D0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Toxoplasma gondii	39% id, 4% cov
Q6W3D0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Toxoplasma gondii	42% id, 4% cov
More...

RRU_RS06605 Rru_A1264 WP_011389019.1: SDR family NAD(P)-dependent oxidoreductase is similar to:	PaperBLAST
A0A168S2B8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera	44% id, 10% cov
A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis	43% id, 10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory