Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum rubrum ATCC 11170 (GCF_000013085.1)

Found 13 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Rhodospirillum rubrum ATCC 11170, or try another query

RRU_RS16840 Rru_A3263 WP_011391011.1: prephenate/arogenate dehydrogenase family protein
is similar to:
PaperBLAST

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

55% id,
82% cov

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

44% id,
97% cov

O67636: prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus

39% id,
88% cov

More...

RRU_RS05075 Rru_A0972 WP_011388727.1: prephenate dehydrogenase
is similar to:
PaperBLAST

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

28% id,
89% cov

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli

34% id,
32% cov

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

32% id,
33% cov

odhB RRU_RS06350 Rru_A1214 WP_011388969.1: 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

35% id,
67% cov

RRU_RS09745 Rru_A1879 WP_011389632.1: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

33% id,
67% cov

RRU_RS16315 Rru_A3162 WP_011390910.1: prephenate dehydratase
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

31% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2176551-2178050 (frame -1) on NC_007643.1 Rhodospirillum rubrum ATCC 11170, complete sequence
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli
Also see hits to annotated proteins above

32% id,
70% cov

3653794-3654771 (frame -3) on NC_007643.1 Rhodospirillum rubrum ATCC 11170, complete sequence
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus
Also see hits to annotated proteins above

30% id,
45% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory