Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum rubrum ATCC 11170 (GCF_000013085.1)

Found 8 curated entries in PaperBLAST's database that match '1.3.1.78' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Rhodospirillum rubrum ATCC 11170, or try another query

RRU_RS16840 Rru_A3263 WP_011391011.1: prephenate/arogenate dehydrogenase family protein
is similar to:
PaperBLAST

tyrAa / P73906: arogenate dehydrogenase monomer (EC 1.3.1.78) from Synechocystis sp.
P73906: arogenate dehydrogenase (NADP+) (EC 1.3.1.78) from Synechocystis sp.

31% id,
100% cov

RRU_RS05075 Rru_A0972 WP_011388727.1: prephenate dehydrogenase
is similar to:
PaperBLAST

TYRA2_ARATH / Q9LMR3: Arogenate dehydrogenase 2, chloroplastic; TyrAAT2; EC 1.3.1.78 from Arabidopsis thaliana
TyrAAT2 / Q9LMR3: arogenate dehydrogenase (EC 1.3.1.78) from Arabidopsis thaliana
Q9LMR3: arogenate dehydrogenase (NADP+) (EC 1.3.1.78) from Arabidopsis thaliana

25% id,
85% cov

TYRA1_ARATH / Q944B6: Arogenate dehydrogenase 1, chloroplastic; TYRATC; TyrAAT1; EC 1.3.1.78 from Arabidopsis thaliana
TyrAAT1 / Q944B6: arogenate dehydrogenase (EC 1.3.1.78) from Arabidopsis thaliana
Q944B6: arogenate dehydrogenase (NADP+) (EC 1.3.1.78) from Arabidopsis thaliana

26% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory