Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum rubrum ATCC 11170 (GCF_000013085.1)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Rhodospirillum rubrum ATCC 11170, or try another query

nifV RRU_RS11745 Rru_A2269 WP_011389924.1: homocitrate synthase
is similar to:
PaperBLAST

NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC 2.3.3.14) from Azotobacter vinelandii

54% id,
96% cov

A0A1Y6KBA1: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

58% id,
86% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

55% id,
90% cov

More...

cimA RRU_RS03625 Rru_A0695 WP_011388453.1: citramalate synthase
is similar to:
PaperBLAST

HOSA_THET2 / O87198: Homocitrate synthase; HCS; EC 2.3.3.14 from Thermus thermophilus
hcs / O87198: homocitrate synthase (EC 2.3.3.14) from Thermus thermophilus

32% id,
94% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

32% id,
94% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

30% id,
91% cov

More...

leuA RRU_RS10000 Rru_A1928 WP_011389681.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

27% id,
89% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

25% id,
97% cov

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

25% id,
94% cov

More...

leuA RRU_RS07590 Rru_A1461 WP_011389215.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

25% id,
94% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

25% id,
90% cov

HOSA_THET2 / O87198: Homocitrate synthase; HCS; EC 2.3.3.14 from Thermus thermophilus
hcs / O87198: homocitrate synthase (EC 2.3.3.14) from Thermus thermophilus

27% id,
78% cov

More...

RRU_RS05845 Rru_A1121 WP_011388876.1: pyruvate carboxylase
is similar to:
PaperBLAST

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

26% id,
42% cov

HOSM_SCHPO / Q9Y823: Homocitrate synthase, mitochondrial; HCS; EC 2.3.3.14 from Schizosaccharomyces pombe
lys4 / RF|NP_596458.1: homocitrate synthase (predicted); EC 2.3.3.14 from Schizosaccharomyces pombe

24% id,
38% cov

HOSC_YEAST / P48570: Homocitrate synthase, cytosolic isozyme; HCS; EC 2.3.3.14 from Saccharomyces cerevisiae
LYS20 / P48570: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae
P48570: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae

24% id,
31% cov

More...

RRU_RS06140 Rru_A1172 WP_011388927.1: Lrp/AsnC family transcriptional regulator
is similar to:
PaperBLAST

HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii

26% id,
28% cov

HOSA_SULAC / Q4J989: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfolobus acidocaldarius
Q4J989: homocitrate synthase (EC 2.3.3.14) from Sulfolobus acidocaldarius

21% id,
27% cov

RRU_RS17915 Rru_A3468 WP_011391215.1: Lrp/AsnC family transcriptional regulator
is similar to:
PaperBLAST

HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii

29% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory