Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum rubrum ATCC 11170 (GCF_000013085.1)

Found 75 curated entries in PaperBLAST's database that match '2.6.1.42' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Rhodospirillum rubrum ATCC 11170, or try another query

RRU_RS15510 Rru_A3004 WP_011390752.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

 51% id,
98% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

 42% id,
96% cov

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

 40% id,
95% cov

More...

RRU_RS11515 Rru_A2223 WP_011389878.1: branched-chain amino acid aminotransferase
is similar to:		 PaperBLAST

BPHYT_RS16285: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Burkholderia phytofirmans

 43% id,
97% cov

N515DRAFT_2015: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Dyella japonica

 43% id,
95% cov

Psest_0450: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Pseudomonas stutzeri

 42% id,
96% cov

More...

RRU_RS05905 Rru_A1131 WP_011388886.1: aminotransferase class IV
is similar to:		 PaperBLAST

GB|AAU18968.1: branched-chain amino acid aminotransferase 2; EC 2.6.1.42 from Bacillus cereus

 37% id,
87% cov

A0A1B1L2T7: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Bacillus thuringiensis

 37% id,
87% cov

E6TUA8: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Evansella cellulosilytica

 35% id,
87% cov

More...

RRU_RS05965 Rru_A1143 WP_011388898.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

 29% id,
98% cov

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

 29% id,
95% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

 27% id,
96% cov

More...

RRU_RS19395 Rru_A3760 WP_011391507.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

 30% id,
94% cov

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

 26% id,
94% cov

RRU_RS02665 Rru_A0508 WP_011388266.1: branched-chain amino acid aminotransferase
is similar to:		 PaperBLAST

ilvE / O86428: branched-chain-amino-acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) from Pseudomonas aeruginosa
O86428: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Pseudomonas aeruginosa

 28% id,
95% cov

F0QW25: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Vulcanisaeta moutnovskia

 31% id,
86% cov

Psest_0450: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Pseudomonas stutzeri

 28% id,
95% cov

More...

RRU_RS08730 Rru_A1682 WP_011389372.1: D-amino-acid transaminase
is similar to:		 PaperBLAST

F0QW25: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Vulcanisaeta moutnovskia

 29% id,
92% cov

F2L0W0: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermoproteus uzoniensis

 29% id,
89% cov

A0A1B1L2T7: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Bacillus thuringiensis

 27% id,
92% cov

More...

RRU_RS09985 Rru_A1925 WP_011389678.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

 29% id,
90% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

 29% id,
73% cov

RRU_RS12485 Rru_A2411 WP_011390164.1: LL-diaminopimelate aminotransferase
is similar to:		 PaperBLAST

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

 28% id,
91% cov

RRU_RS01580 Rru_A0300 WP_011388053.1: branched-chain amino acid aminotransferase
is similar to:		 PaperBLAST

F0QW25: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Vulcanisaeta moutnovskia

 28% id,
87% cov

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli
ilvE / RF|YP_026247: branched-chain-amino-acid aminotransferase; EC 2.6.1.42 from Escherichia coli
ilvE / P0AB80: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

 26% id,
94% cov

A0A1B1L2T7: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Bacillus thuringiensis

 26% id,
94% cov

More...

RRU_RS19125 Rru_A3706 WP_014626642.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

 27% id,
84% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1974516-1975433 (frame +3) on NC_007643.1 Rhodospirillum rubrum ATCC 11170, complete sequence
is similar to:		 PaperBLAST

F0QW25: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Vulcanisaeta moutnovskia
Also see hits to annotated proteins above

 29% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory