Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum rubrum ATCC 11170 (GCF_000013085.1)

Found 7 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase large subunit' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Rhodospirillum rubrum ATCC 11170, or try another query

leuC RRU_RS06225 Rru_A1189 WP_011388944.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

leuC / CAD19516.1: 3-isopropylmalate dehydratase large subunit, partial from Rhizobium etli

77% id,
100% cov

leuC / ECOCYC|LEUC-MONOMER: 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 from Escherichia coli

67% id,
99% cov

LEUC1_SALTY / P15717: 3-isopropylmalate dehydratase large subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 from Salmonella typhimurium

66% id,
99% cov

More...

acnA RRU_RS18140 Rru_A3511 WP_011391258.1: aconitate hydratase AcnA
is similar to:
PaperBLAST

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana

28% id,
45% cov

leuD RRU_RS06230 Rru_A1190 WP_011388945.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

GLOJ_GLAL2 / S3E7P8: 3-isopropylmalate dehydratase large subunit gloJ; L-homotyrosine biosynthesis sub-cluster protein gloJ; Pneumocandin biosynthesis cluster protein J; EC 4.2.1.33 from Glarea lozoyensis

33% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory