Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodospirillum rubrum ATCC 11170 (GCF_000013085.1)

Found 1 curated entries in PaperBLAST's database that match 'cystathionine-gamma-lyase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Rhodospirillum rubrum ATCC 11170, or try another query

RRU_RS04120 Rru_A0786 WP_011388544.1: PLP-dependent aspartate aminotransferase family protein
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

51% id,
89% cov

RRU_RS00495 Rru_A0098 WP_011387859.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

36% id,
88% cov

RRU_RS04060 Rru_A0774 WP_011388532.1: PLP-dependent transferase
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

32% id,
94% cov

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

35% id,
39% cov

metZ RRU_RS16580 Rru_A3214 WP_011390962.1: O-succinylhomoserine sulfhydrylase
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

36% id,
80% cov

metC RRU_RS08365 Rru_A1613 WP_011389303.1: cystathionine beta-lyase
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

32% id,
88% cov

RRU_RS10755 Rru_A2075 WP_011389828.1: O-acetylhomoserine aminocarboxypropyltransferase
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

33% id,
69% cov

RRU_RS04110 Rru_A0784 WP_014626023.1: PLP-dependent transferase
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

36% id,
48% cov

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

32% id,
39% cov

RRU_RS09535 Rru_A1836 WP_011389589.1: PLP-dependent transferase
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

35% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory