Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Novosphingobium aromaticivorans DSM 12444 (GCF_000013325.1)

Found 68 curated entries in PaperBLAST's database that match '4.2.1.10' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Novosphingobium aromaticivorans DSM 12444, or try another query

aroQ SARO_RS10450 Saro_2077 WP_011445725.1: type II 3-dehydroquinate dehydratase is similar to:	PaperBLAST
Q9PH97: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Xylella fastidiosa	53% id, 95% cov
O30557: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Pseudomonas aeruginosa	53% id, 95% cov
qsuC / A4QB64: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Corynebacterium glutamicum	51% id, 96% cov
O52377: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Corynebacterium glutamicum	51% id, 96% cov
N1V364: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arthrobacter crystallopoietes	51% id, 96% cov
D4LCT8: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Ruminococcus champanellensis	53% id, 93% cov
G8M0G7: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Acetivibrio clariflavus	50% id, 98% cov
A0A124C1Y7: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Streptomyces acidiscabies	53% id, 92% cov
E4RLB7: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Halanaerobium hydrogeniformans	51% id, 94% cov
AROQ_STRCO / P15474: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Streptomyces coelicolor P15474: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Streptomyces coelicolor	52% id, 92% cov
A3M692: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Acinetobacter baumannii	49% id, 95% cov
AROQ_ACTPL / P43877: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Actinobacillus pleuropneumoniae	51% id, 91% cov
A1SZA3: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Psychromonas ingrahamii	50% id, 94% cov
A0A0H3FM50: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Klebsiella aerogenes	50% id, 93% cov
AROQ_MYCTU / P9WPX7: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Mycobacterium tuberculosis P9WPX7: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Mycobacterium tuberculosis	49% id, 94% cov
A8AQF2: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Citrobacter koseri	49% id, 93% cov
D1A7X0: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Thermomonospora curvata	49% id, 93% cov
I0L192: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Micromonospora lupini	47% id, 96% cov
3DHQ_EMENI / P05147: Catabolic 3-dehydroquinase; cDHQase; 3-dehydroquinate dehydratase; EC 4.2.1.10 from Emericella nidulans	50% id, 90% cov
3DHQ_CANAL / Q59Z17: Catabolic 3-dehydroquinase; cDHQase; 3-dehydroquinate dehydratase; EC 4.2.1.10 from Candida albicans	47% id, 94% cov
GOX0437 / Q5FTS6: periplasmic dehydroquinate dehydratase (EC 4.2.1.10) from Gluconobacter oxydans	50% id, 87% cov
W6JLW3: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Gluconobacter oxydans	49% id, 87% cov
B2A551: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Natranaerobius thermophilus	45% id, 96% cov
Q0VMZ2: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Alcanivorax borkumensis	49% id, 87% cov
M1E6S9: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Thermodesulfobium narugense	46% id, 92% cov
AROQ_BACSU / P54517: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Bacillus subtilis P54517: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Bacillus subtilis	47% id, 90% cov
Q88IJ6: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Pseudomonas putida	43% id, 98% cov
A5WDH9: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Psychrobacter sp.	49% id, 84% cov
D4S0D1: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Butyrivibrio crossotus	38% id, 97% cov
AROQ_HELPY / Q48255: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Helicobacter pylori Q48255: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Helicobacter pylori	41% id, 85% cov
3DHQ_NEUCR / P05195: Catabolic 3-dehydroquinase; cDHQase; 3-dehydroquinate dehydratase; Quinic acid degradation cluster protein 2f; EC 4.2.1.10 from Neurospora crassa	35% id, 94% cov
B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Lancefieldella rimae	39% id, 48% cov
More...

aroE SARO_RS00575 Saro_0115 WP_011443778.1: shikimate dehydrogenase is similar to:	PaperBLAST
Q6PUF9: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum	30% id, 46% cov
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans	34% id, 10% cov

aroB SARO_RS09510 Saro_1899 WP_011445549.1: 3-dehydroquinate synthase is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans	37% id, 22% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	33% id, 21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory