Curated BLAST for Genomes

 

Curated BLAST

Searching in Stutzerimonas stutzeri A1501 (GCF_000013785.1)

Found 21 curated entries in PaperBLAST's database that match '1.2.1.27' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Stutzerimonas stutzeri A1501, or try another query

PST_RS09745 PST_1926 WP_011913070.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

98% id,
100% cov

dntE / Q8VUC5: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Burkholderia cepacia

79% id,
99% cov

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

73% id,
99% cov

More...

PST_RS02550 PST_0494 WP_011911728.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

62% id,
100% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

62% id,
100% cov

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

61% id,
100% cov

More...

betB PST_RS08835 PST_1745 WP_011912900.1: betaine-aldehyde dehydrogenase
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

35% id,
94% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

34% id,
98% cov

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

34% id,
95% cov

More...

gabD PST_RS00500 WP_020309040.1: NADP-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

36% id,
91% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

32% id,
96% cov

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

31% id,
93% cov

More...

PST_RS10485 PST_2071 WP_011913206.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

32% id,
98% cov

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

30% id,
95% cov

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

30% id,
94% cov

More...

PST_RS00240 PST_0046 WP_011911298.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

33% id,
97% cov

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

33% id,
96% cov

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

33% id,
94% cov

More...

PST_RS18325 PST_3679 WP_011914694.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

32% id,
98% cov

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

29% id,
95% cov

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

30% id,
94% cov

More...

gabD PST_RS03775 PST_0740 WP_037004979.1: NADP-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

34% id,
92% cov

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

34% id,
91% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

31% id,
96% cov

More...

putA PST_RS06320 PST_1242 WP_011912423.1: bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

29% id,
96% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

29% id,
96% cov

MMSA_PSEAE / P28810: Methylmalonate-semialdehyde dehydrogenase [acylating]; MMSDH; EC 1.2.1.27 from Pseudomonas aeruginosa
mmsA / P28810: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Pseudomonas aeruginosa

28% id,
98% cov

More...

PST_RS17410 PST_3494 WP_011914517.1: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

26% id,
93% cov

dntE / Q8VUC5: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Burkholderia cepacia

25% id,
94% cov

PfGW456L13_5146: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

26% id,
92% cov

More...

PST_RS19905 PST_3999 WP_041755833.1: coniferyl aldehyde dehydrogenase
is similar to:
PaperBLAST

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

26% id,
89% cov

Q97YT9: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Saccharolobus solfataricus

25% id,
88% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

25% id,
85% cov

More...

PST_RS03125 PST_0609 WP_011911841.1: coniferyl aldehyde dehydrogenase
is similar to:
PaperBLAST

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

23% id,
90% cov

Q97YT9: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Saccharolobus solfataricus

25% id,
66% cov

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

27% id,
59% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory