Curated BLAST for Genomes

 

Curated BLAST

Searching in Stutzerimonas stutzeri A1501 (GCF_000013785.1)

Found 44 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Stutzerimonas stutzeri A1501, or try another query

thiO PST_RS04985 PST_0976 WP_085988597.1: glycine oxidase ThiO
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

31% id,
93% cov

DAO_BRADU / Q89F89: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Bradyrhizobium diazoefficiens

25% id,
98% cov

DAO_RUBXD / Q1AYM8: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Rubrobacter xylanophilus
Q1AYM8: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

26% id,
92% cov

More...

PST_RS11125 PST_2205 WP_011913335.1: D-amino acid dehydrogenase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

28% id,
45% cov

DAO_STRCO / Q9X7P6: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Streptomyces coelicolor

41% id,
20% cov

OXDA_RHOTO / P80324: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Rhodotorula toruloides
P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

48% id,
12% cov

dadA PST_RS02490 PST_0483 WP_011911717.1: D-amino acid dehydrogenase
is similar to:
PaperBLAST

OXDA_RHOTO / P80324: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Rhodotorula toruloides
P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

43% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory