Curated BLAST for Genomes

 

Curated BLAST

Searching in Stutzerimonas stutzeri A1501 (GCF_000013785.1)

Found 22 curated entries in PaperBLAST's database that match '4.1.1.18' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Stutzerimonas stutzeri A1501, or try another query

PST_RS11335 PST_2250 WP_011913376.1: Orn/Lys/Arg decarboxylase N-terminal domain-containing protein
is similar to:
PaperBLAST

LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa

83% id,
100% cov

A0A0H3FP92: lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes

45% id,
89% cov

Q87KT6: lysine decarboxylase (EC 4.1.1.18) from Vibrio parahaemolyticus

45% id,
89% cov

More...

PST_RS18410 PST_3698 WP_041755800.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor
Q9L072: lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor

59% id,
98% cov

bibA / B6EP92: L-lysine decarboxylase (EC 4.1.1.18) from Aliivibrio salmonicida

50% id,
93% cov

PST_RS05600 PST_1098 WP_011912283.1: TIGR00730 family Rossman fold protein
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

48% id,
85% cov

lysA PST_RS02635 PST_0511 WP_011911744.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca

34% id,
98% cov

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium

25% id,
95% cov

PST_RS05085 PST_0994 WP_011912182.1: type III PLP-dependent enzyme
is similar to:
PaperBLAST

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium

33% id,
91% cov

ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa

30% id,
65% cov

PST_RS07655 PST_1510 WP_011912673.1: LOG family protein
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

30% id,
88% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory