Curated BLAST for Genomes

 

Curated BLAST

Searching in Stutzerimonas stutzeri A1501 (GCF_000013785.1)

Found 3 curated entries in PaperBLAST's database that match '5.5.1.2' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Stutzerimonas stutzeri A1501, or try another query

PST_RS06395 PST_1257 WP_011912438.1: 3-carboxy-cis,cis-muconate cycloisomerase
is similar to:
PaperBLAST

RR42_RS32055: 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2) from Cupriavidus basilensis

55% id,
99% cov

pcaB2 / Q2HNY9: 3-carboxymuconate lactonizing enzyme type 2 (EC 5.5.1.2) from Hydrogenophaga intermedia

41% id,
96% cov

Q2HNZ1: 3-Carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) from Agrobacterium tumefaciens

37% id,
95% cov

argH PST_RS02680 PST_0521 WP_011911754.1: argininosuccinate lyase
is similar to:
PaperBLAST

Q2HNZ1: 3-Carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) from Agrobacterium tumefaciens

23% id,
75% cov

purB PST_RS11615 PST_2306 WP_041755515.1: adenylosuccinate lyase
is similar to:
PaperBLAST

RR42_RS32055: 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2) from Cupriavidus basilensis

30% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory